ALPHASUITEATLASTM

PDB 8WO1

Cryo-EM Structure of Human TLR4/MD-2/DLAM5 Complex

ELECTRON MICROSCOPY · 2.24 Å

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Protein descriptions

Descriptions refer to the mapped proteins, not necessarily the full deposited construct or assembly.

O00206 · Chains A, B

Toll-like receptor 4

Homo sapiens

Transmembrane receptor that functions as a pattern recognition receptor recognizing pathogen- and damage-associated molecular patterns (PAMPs and DAMPs) to induce innate immune responses via downstream signaling pathways [1–12]. At the plasma membrane, cooperates with LY96 to mediate the innate immune response to bacterial lipopolysaccharide (LPS) [9]. Also involved in LPS-independent inflammatory responses triggered by free fatty acids, such as palmitate, and Ni(2+) [7].

Mechanistically, acts via MYD88, TIRAP and TRAF6, leading to NF-kappa-B activation, cytokine secretion and the inflammatory response [1, 13, 9, 14, 15]. Alternatively, CD14-mediated TLR4 internalization via endocytosis is associated with the initiation of a MYD88-independent signaling via the TICAM1-TBK1-IRF3 axis leading to type I interferon production [16]. In addition to the secretion of pro-inflammatory cytokines, initiates the activation of NLRP3 inflammasome and formation of a positive feedback loop between autophagy and NF-kappa-B signaling cascade [17].

In complex with TLR6, promotes inflammation in monocytes/macrophages by associating with TLR6 and the receptor CD86 [8]. Upon ligand binding, such as oxLDL or amyloid-beta 42, the TLR4:TLR6 complex is internalized and triggers inflammatory response, leading to NF-kappa-B-dependent production of CXCL1, CXCL2 and CCL9 cytokines, via MYD88 signaling pathway, and CCL5 cytokine, via TICAM1 signaling pathway [8]. In myeloid dendritic cells, vesicular stomatitis virus glycoprotein G but not LPS promotes the activation of IRF7, leading to type I IFN production in a CD14-dependent manner [18, 8].

Required for the migration-promoting effects of ZG16B/PAUF on pancreatic cancer cells [19]. Acts as an activator of necroptosis, a programmed cell death process, in macrophages (By similarity). In response to LPS, recruits the adapter TRIF/TICAM1, which binds and activates RIPK3 kinase, leading to phosphorylation and activation of MLKL, triggering execution of programmed necrosis via disruption of the plasma membrane (By similarity).

TLR4-mediated necroptosis is independent of TNF-mediated signaling (By similarity)

UniProt · O00206 · Snapshot 10/11/2026

Supporting publications · 19
  1. PubMed 10835634
  2. PubMed 15809303
  3. PubMed 16622205
  4. PubMed 17292937
  5. PubMed 17478729
  6. PubMed 20037584
  7. PubMed 20711192
  8. PubMed 23880187
  9. PubMed 27022195
  10. PubMed 29038465
  11. PubMed 17803912
  12. PubMed 15852007
  13. PubMed 21393102
  14. PubMed 36945827
  15. PubMed 9237759
  16. PubMed 14517278
  17. PubMed 32894580
  18. PubMed 15265881
  19. PubMed 36232715

Q9Y6Y9 · Chains C, D

Lymphocyte antigen 96

Homo sapiens

Binds bacterial lipopolysaccharide (LPS) [1, 2]. Cooperates with TLR4 in the innate immune response to bacterial lipopolysaccharide (LPS), and with TLR2 in the response to cell wall components from Gram-positive and Gram-negative bacteria [3, 4]. Enhances TLR4-dependent activation of NF-kappa-B [5].

Cells expressing both LY96 and TLR4, but not TLR4 alone, respond to LPS [5]

UniProt · Q9Y6Y9 · Snapshot 10/11/2026

Supporting publications · 5
  1. PubMed 17569869
  2. PubMed 17803912
  3. PubMed 11160242
  4. PubMed 11593030
  5. PubMed 10359581

Components and protein mappings

Mappings below identify source-linked proteins. They do not establish residue-level annotation coverage or direct binding.

  • Toll-like receptor 4

    PROTEIN · Chains A, B

    Homo sapiens

    O00206

  • Lymphocyte antigen 96

    PROTEIN · Chains C, D

    Homo sapiens

    Q9Y6Y9

  • 2-acetamido-2-deoxy-beta-D-glucopyranose

    LIGAND · Chains K, L, N, O, Q, V

    No UniProt mapping provided

  • 2-amino-2-deoxy-4-O-phosphono-alpha-D-glucopyranose

    LIGAND · Chains M, P

    No UniProt mapping provided

  • (3R)-3-(dodecanoyloxy)tetradecanoic acid

    LIGAND · Chains R, W

    No UniProt mapping provided

  • (3R)-3-(tetradecanoyloxy)tetradecanoic acid

    LIGAND · Chains S, X

    No UniProt mapping provided

  • [(2~{R},3~{S},4~{R},5~{S})-2-(hydroxymethyl)-5-methoxy-4,6-bis(oxidanyl)oxan-3-yl] dihydrogen phosphate

    LIGAND · Chains T, Y

    No UniProt mapping provided

  • (3~{S})-3-decanoyloxytetradecanoic acid

    LIGAND · Chains U, Z

    No UniProt mapping provided

Protein annotations are displayed in the viewer only where residue mappings are verified. Domain annotations do not apply to DNA or RNA.

Biological assemblies

  • Assembly 1

    author and software defined assembly

    Component membership incomplete · Chains A, B, C, D, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z

    Open assembly 1 →

Primary publication

Structural insight into TLR4/MD-2 activation by synthetic LPS mimetics with distinct binding modes.

Paper date: 05/05/2025

Sources and attribution

Snapshot updated 09/11/2026. Source descriptions are attributed below; Atlas combines and displays their annotations.

No provider endorsement is implied. Attribution and reuse terms.