ALPHASUITEATLASTM

PDB 6X6C

Cryo-EM structure of NLRP1-DPP9-VbP complex

ELECTRON MICROSCOPY · 2.9 Å

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Protein descriptions

Descriptions refer to the mapped proteins, not necessarily the full deposited construct or assembly.

Q9C000 · Chains C, D

NACHT, LRR and PYD domains-containing protein 1

Homo sapiens

Acts as the sensor component of the NLRP1 inflammasome, which mediates inflammasome activation in response to various pathogen-associated signals, leading to subsequent pyroptosis [1–10]. Inflammasomes are supramolecular complexes that assemble in the cytosol in response to pathogens and other damage-associated signals and play critical roles in innate immunity and inflammation [1, 2, 3]. Acts as a recognition receptor (PRR): recognizes specific pathogens and other damage-associated signals, such as cleavage by some human enteroviruses and rhinoviruses, double-stranded RNA, UV-B irradiation, or Val-boroPro inhibitor, and mediates the formation of the inflammasome polymeric complex composed of NLRP1, CASP1 and PYCARD/ASC [1, 2, 3, 11, 12, 13, 6, 14, 7, 10].

In response to pathogen-associated signals, the N-terminal part of NLRP1 is degraded by the proteasome, releasing the cleaved C-terminal part of the protein (NACHT, LRR and PYD domains-containing protein 1, C-terminus), which polymerizes and associates with PYCARD/ASC to initiate the formation of the inflammasome complex: the NLRP1 inflammasome recruits pro-caspase-1 (proCASP1) and promotes caspase-1 (CASP1) activation, which subsequently cleaves and activates inflammatory cytokines IL1B and IL18 and gasdermin-D (GSDMD), leading to pyroptosis [1, 2, 3, 15, 6]. In the absence of GSDMD expression, the NLRP1 inflammasome is able to recruit and activate CASP8, leading to activation of gasdermin-E (GSDME) [16, 17]. Activation of NLRP1 inflammasome is also required for HMGB1 secretion; the active cytokines and HMGB1 stimulate inflammatory responses [18].

Binds ATP and shows ATPase activity [19, 20, 14]. Plays an important role in antiviral immunity and inflammation in the human airway epithelium [6]. Specifically recognizes a number of pathogen-associated signals: upon infection by human rhinoviruses 14 and 16 (HRV-14 and HRV-16), NLRP1 is cleaved and activated which triggers NLRP1-dependent inflammasome activation and IL18 secretion [6].

Positive-strand RNA viruses, such as Semliki forest virus and long dsRNA activate the NLRP1 inflammasome, triggering IL1B release in a NLRP1-dependent fashion [14]. Acts as a direct sensor for long dsRNA and thus RNA virus infection [14]. May also be activated by muramyl dipeptide (MDP), a fragment of bacterial peptidoglycan, in a NOD2-dependent manner [21].

The NLRP1 inflammasome is also activated in response to UV-B irradiation causing ribosome collisions: ribosome collisions cause phosphorylation and activation of NLRP1 in a MAP3K20-dependent manner, leading to pyroptosis [10] Constitutes the precursor of the NLRP1 inflammasome, which mediates autoproteolytic processing within the FIIND domain to generate the N-terminal and C-terminal parts, which are associated non-covalently in absence of pathogens and other damage-associated signals Regulatory part that prevents formation of the NLRP1 inflammasome: in absence of pathogens and other damage-associated signals, interacts with the C-terminal part of NLRP1 (NACHT, LRR and PYD domains-containing protein 1, C-terminus), preventing activation of the NLRP1 inflammasome [6]. In response to pathogen-associated signals, this part is ubiquitinated and degraded by the proteasome, releasing the cleaved C-terminal part of the protein, which polymerizes and forms the NLRP1 inflammasome [6] Constitutes the active part of the NLRP1 inflammasome [6, 8, 9]. In absence of pathogens and other damage-associated signals, interacts with the N-terminal part of NLRP1 (NACHT, LRR and PYD domains-containing protein 1, N-terminus), preventing activation of the NLRP1 inflammasome [6].

In response to pathogen-associated signals, the N-terminal part of NLRP1 is degraded by the proteasome, releasing this form, which polymerizes and associates with PYCARD/ASC to form of the NLRP1 inflammasome complex: the NLRP1 inflammasome complex then directly recruits pro-caspase-1 (proCASP1) and promotes caspase-1 (CASP1) activation, leading to gasdermin-D (GSDMD) cleavage and subsequent pyroptosis [6] It is unclear whether is involved in inflammasome formation. It is not cleaved within the FIIND domain, does not assemble into specks, nor promote IL1B release [3]. However, in an vitro cell-free system, it has been shown to be activated by MDP [2]

UniProt · Q9C000 · Snapshot 10/11/2026

Supporting publications · 21
  1. PubMed 12191486
  2. PubMed 17349957
  3. PubMed 22665479
  4. PubMed 27662089
  5. PubMed 31484767
  6. PubMed 33093214
  7. PubMed 33410748
  8. PubMed 33731929
  9. PubMed 33731932
  10. PubMed 35857590
  11. PubMed 25562666
  12. PubMed 30096351
  13. PubMed 30291141
  14. PubMed 33243852
  15. PubMed 32051255
  16. PubMed 33852854
  17. PubMed 35594856
  18. PubMed 22801494
  19. PubMed 11113115
  20. PubMed 15212762
  21. PubMed 18511561

Components and protein mappings

Mappings below identify source-linked proteins. They do not establish residue-level annotation coverage or direct binding.

  • Dipeptidyl peptidase 9

    PROTEIN · Chains A, B

    Homo sapiens

    Q86TI2

  • NACHT, LRR and PYD domains-containing protein 1

    PROTEIN · Chains C, D

    Homo sapiens

    Q9C000

  • [(2~{R})-1-[(2~{R})-2-azanyl-3-methyl-butanoyl]pyrrolidin-2-yl]boronic acid

    LIGAND · Chains E, F

    No UniProt mapping provided

Protein annotations are displayed in the viewer only where residue mappings are verified. Domain annotations do not apply to DNA or RNA.

Biological assemblies

  • Assembly 1

    author defined assembly

    Component membership checked · Chains A, B, C, D, E, F

    Open assembly 1 →

Primary publication

DPP9 sequesters the C terminus of NLRP1 to repress inflammasome activation.

Paper date: 17/03/2021

Sources and attribution

Snapshot updated 09/11/2026. Source descriptions are attributed below; Atlas combines and displays their annotations.

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