ALPHASUITEATLASTM

PDB 6GU2

CDK1/CyclinB/Cks2 in complex with Flavopiridol

X-RAY DIFFRACTION · 2 Å

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Protein descriptions

Descriptions refer to the mapped proteins, not necessarily the full deposited construct or assembly.

P06493 · Chains A

Cyclin-dependent kinase 1

Homo sapiens

Plays a key role in the control of the eukaryotic cell cycle by modulating the centrosome cycle as well as mitotic onset; promotes G2-M transition via association with multiple interphase cyclins [1–21]. Phosphorylates PARVA/actopaxin, APC, AMPH, APC, ASB7, BARD1, Bcl-xL/BCL2L1, BRCA2, CALD1, CASP8, CDC7, CDC20, CDC25A, CDC25C, CC2D1A, CENPA, CSNK2 proteins/CKII, FZR1/CDH1, CDK7, CEBPB, CHAMP1, DMD/dystrophin, EEF1 proteins/EF-1, EZH2, KIF11/EG5, EGFR, FANCG, FOS, GFAP, GOLGA2/GM130, GRASP1, UBE2A/hHR6A, HIST1H1 proteins/histone H1, HMGA1, HIVEP3/KRC, UHRF1, KAT5, LMNA, LMNB, LBR, MKI67, LATS1, MAP1B, MAP4, MARCKS, MCM2, MCM4, MKLP1, MLST8, MYB, NEFH, NFIC, NPC/nuclear pore complex, PITPNM1/NIR2, NPM1, NCL, NUCKS1, NPM1/numatrin, ORC1, PRKAR2A, EEF1E1/p18, EIF3F/p47, p53/TP53, NONO/p54NRB, PAPOLA, PLEC/plectin, RB1, TPPP, UL40/R2, RAB4A, RAP1GAP, RBBP8/CtIP, RCC1, RPS6KB1/S6K1, KHDRBS1/SAM68, ESPL1, SKI, BIRC5/survivin, STIP1, TEX14, beta-tubulins, MAPT/TAU, NEDD1, VIM/vimentin, TK1, FOXO1, RUNX1/AML1, SAMHD1, SIRT2, CGAS, GLI2 and RUNX2 [1, 2, 3, 4, 22, 5, 6, 7, 8, 9, 10, 11, 23, 12, 13, 14, 15, 24, 16, 17, 18, 20, 25, 26, 27, 21]. CDK1/CDC2-cyclin-B controls pronuclear union in interphase fertilized eggs [28, 29].

Essential for early stages of embryonic development [28, 29]. During G2 and early mitosis, CDC25A/B/C-mediated dephosphorylation activates CDK1/cyclin complexes which phosphorylate several substrates that trigger at least centrosome separation, Golgi dynamics, nuclear envelope breakdown and chromosome condensation [28, 29, 11, 13, 19]. Once chromosomes are condensed and aligned at the metaphase plate, CDK1 activity is switched off by WEE1- and PKMYT1-mediated phosphorylation to allow sister chromatid separation, chromosome decondensation, reformation of the nuclear envelope and cytokinesis [28, 29].

Phosphorylates KRT5 during prometaphase and metaphase (By similarity). Activated by the CDK-activating kinase (CAK) complex consisting of CDK7, cyclin-H/CCNH and MAT1, which is a master regulator of CDK activity [30]. Inactivated by PKR/EIF2AK2- and WEE1-mediated phosphorylation upon DNA damage to stop cell cycle and genome replication at the G2 checkpoint thus facilitating DNA repair [29].

Reactivated after successful DNA repair through WIP1-dependent signaling leading to CDC25A/B/C-mediated dephosphorylation and restoring cell cycle progression [31]. Catalyzes lamin (LMNA, LMNB1 and LMNB2) phosphorylation at the onset of mitosis, promoting nuclear envelope breakdown [11, 13, 32]. In proliferating cells, CDK1-mediated FOXO1 phosphorylation at the G2-M phase represses FOXO1 interaction with 14-3-3 proteins and thereby promotes FOXO1 nuclear accumulation and transcription factor activity, leading to cell death of postmitotic neurons [4].

The phosphorylation of beta-tubulins regulates microtubule dynamics during mitosis [33]. NEDD1 phosphorylation promotes PLK1-mediated NEDD1 phosphorylation and subsequent targeting of the gamma-tubulin ring complex (gTuRC) to the centrosome, an important step for spindle formation [5]. In addition, CC2D1A phosphorylation regulates CC2D1A spindle pole localization and association with SCC1/RAD21 and centriole cohesion during mitosis [7].

The phosphorylation of Bcl-xL/BCL2L1 after prolongated G2 arrest upon DNA damage triggers apoptosis [6]. In contrast, CASP8 phosphorylation during mitosis prevents its activation by proteolysis and subsequent apoptosis [9]. This phosphorylation occurs in cancer cell lines, as well as in primary breast tissues and lymphocytes [9].

EZH2 phosphorylation promotes H3K27me3 maintenance and epigenetic gene silencing [8]. CALD1 phosphorylation promotes Schwann cell migration during peripheral nerve regeneration (By similarity). CDK1-cyclin-B complex phosphorylates NCKAP5L and mediates its dissociation from centrosomes during mitosis [34].

Regulates the amplitude of the cyclic expression of the core clock gene BMAL1 by phosphorylating its transcriptional repressor NR1D1, and this phosphorylation is necessary for SCF(FBXW7)-mediated ubiquitination and proteasomal degradation of NR1D1 [35]. Phosphorylates EML3 at 'Thr-881' which is essential for its interaction with HAUS augmin-like complex and TUBG1 [36]. Phosphorylates CGAS during mitosis, leading to its inhibition, thereby preventing CGAS activation by self DNA during mitosis [26].

Phosphorylates SKA3 on multiple sites during mitosis which promotes SKA3 binding to the NDC80 complex and anchoring of the SKA complex to kinetochores, to enable stable attachment of mitotic spindle microtubules to kinetochores [37, 38, 39] (Microbial infection) Acts as a receptor for hepatitis C virus (HCV) in hepatocytes and facilitates its cell entry

UniProt · P06493 · Snapshot 10/11/2026

Supporting publications · 39
  1. PubMed 16407259
  2. PubMed 16933150
  3. PubMed 17459720
  4. PubMed 18356527
  5. PubMed 19509060
  6. PubMed 19917720
  7. PubMed 20171170
  8. PubMed 20935635
  9. PubMed 20937773
  10. PubMed 21063390
  11. PubMed 2188730
  12. PubMed 23355470
  13. PubMed 2344612
  14. PubMed 23601106
  15. PubMed 23602554
  16. PubMed 25556658
  17. PubMed 26829474
  18. PubMed 27814491
  19. PubMed 30139873
  20. PubMed 30704899
  21. PubMed 40440427
  22. PubMed 19202191
  23. PubMed 22411829
  24. PubMed 25012651
  25. PubMed 31279575
  26. PubMed 32351706
  27. PubMed 34741373
  28. PubMed 18480403
  29. PubMed 20360007
  30. PubMed 41100585
  31. PubMed 20395957
  32. PubMed 37788673
  33. PubMed 16371510
  34. PubMed 26549230
  35. PubMed 27238018
  36. PubMed 30723163
  37. PubMed 28479321
  38. PubMed 31804178
  39. PubMed 32491969

Components and protein mappings

Mappings below identify source-linked proteins. They do not establish residue-level annotation coverage or direct binding.

  • Cyclin-dependent kinase 1

    PROTEIN · Chains A

    Homo sapiens

    P06493

  • G2/mitotic-specific cyclin-B1

    PROTEIN · Chains B

    Homo sapiens

    P14635

  • Cyclin-dependent kinases regulatory subunit 2

    PROTEIN · Chains C

    Homo sapiens

    P33552

  • 2-(2-chlorophenyl)-8-[(3~{R},4~{R})-1-methyl-3-oxidanyl-piperidin-4-yl]-5,7-bis(oxidanyl)chromen-4-one

    LIGAND · Chains D

    No UniProt mapping provided

Protein annotations are displayed in the viewer only where residue mappings are verified. Domain annotations do not apply to DNA or RNA.

Biological assemblies

  • Assembly 1

    author and software defined assembly

    Component membership checked · Chains A, B, C, D

    Open assembly 1 →

Primary publication

Differences in the Conformational Energy Landscape of CDK1 and CDK2 Suggest a Mechanism for Achieving Selective CDK Inhibition.

Paper date: 21/11/2018

Sources and attribution

Snapshot updated 09/11/2026. Source descriptions are attributed below; Atlas combines and displays their annotations.

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